Publications
Agnieszka
Oniśko. Probabilistic Causal Models in Medicine:
Application to Diagnosis of Liver Disorders (PS
version,
PDF
version).
Ph.D. Dissertation, Institute of Biocybernetics and Biomedical Engineering,
Polish Academy of Science, Warsaw, March 2003.
Journal
papers:
TE Jones, Agnieszka Onisko, R.
Marshall Austin, Jing Yu. Change
of Practice Patterns Following An Educational Comment on Reports of
Benign-Appearing Endometrial Cells in Pap Tests: An Institutional Experience.
American Journal of Clinical Pathology, 2021, Epub ahead of print.
Terrell E Jones, Agnieszka Onisko
and R. Marshall Austin. Personalized
Medicine and Cervical Screening: Development of Individualized Quantitative
Risk Assessments for Cervical Adenocarcinoma and Adenocarcinoma-In-Situ,
Acta Cytologica, 2021, 65 (2), 158-164.
TE Jones, D Pradhan, DJ Dabbs, R Bhargava, A Onisko, MW Jones. Immunohistochemical
Markers With Potential Diagnostic, Prognostic, and Therapeutic Significance in
Uterine Carcinosarcoma: A Clinicopathologic Study of 43 Cases,
International Journal of Gynecological Pathology, 2021, 40 (1), 84-93.
W. Łaguna, J.
Bagińska, A. Oniśko. Bayesian Network
Modeling in Discovering Risk Factors of Dental Caries in Three-Year-Old
Children. Progress in Health Sciences 2019; 9 (1), 118-125.
Agnieszka Onisko, Marek J. Druzdzel, R. Marshall Austin. Application of Bayesian network modeling to pathology informatics. Diagnostic Cytopathology, 2019; 47 (1), 41-47.
Beth Clark, Agnieszka Onisko, Binara Assylbekova, Xin Li, Rohit Bhargava, David Dabbs. Breast Cancer Global Tumor Biomarkers: A Quality Assurance Study of Intratumoral Heterogeneity. Modern Pathology, 2019; 32 (3), 354-366.
Austin RM, Onisko A, Zhao C.
Enhanced Detection of
Cervical Cancer and Precancer Through Use of Imaged Liquid-Based Cytology in
Routine Cytology and HPV Cotesting. Am J Clin Pathol, 2018; 150 (5), 385-392.
Dabbs DJ, Clark BZ, Serdy K,
Onisko A, Brufsky AM,
Smalley S, Perkins S, Bhargava R. Pathologist's health-care
value in the triage of Oncotype DX® testing: a value-based pathology study of tumour biology with outcomes. Histopathology, 2018; 73
(4), 692-700.
Clark BZ, Yoest JM, Onisko A, Dabbs DJ. Effects of Hydrochloric
Acid and Formic Acid Decalcification on Breast Tumor Biomarkers and HER2
Fluorescence In Situ Hybridization. Applied Immunohistochemistry Molecular
Morphology, 2017; 27 (3), 223-230.
Jing Yu, Agnieszka Onisko,
R. Marshall Austin. Negative
Predictive Value and Significance of Benign-Appearing Endometrial Cells in
Papanicolaou Tests. American Journal of Clinical Pathology,
2017;148(3):274-279.
Agnieszka Onisko, Marek J.
Druzdzel, R. Marshall Austin. How to interpret the
results of medical time series data analysis: Classical statistical approaches
versus dynamic Bayesian network modeling. Journal of Pathology Informatics,
2016; 7:50.
R. Marshall Austin, Agnieszka Oniśko.
Increased
Cervical Cancer Risk Associated with Extended Screening Intervals after
Negative Human Papilloma Virus (HPV) Test Results: Bayesian Risk Estimates
using the Pittsburgh Cervical Cancer Screening Model. Journal of American Society of Cytopathology, 5 (1):9-14,
2016.
Justyna Szczygieł, Agnieszka Oniśko,
Jolanta Świderska, Elżbieta
Krysiewicz, Jerzy Sienkiewicz. Probabilistic
Graphical Model Supporting Early Diagnosis of Autism Spectrum Disorder, Advances in Computer Science Research, No. 11, s. 151-164,
2014.
Agnieszka Onisko,
Marek J. Druzdzel. Impact of Precision of Bayesian
Networks Parameters on Accuracy of Medical Diagnostic Systems, Artificial
Intelligence in Medicine, 57(3):197-206, 2013.
Mirka W. Jones,
Agnieszka Onisko, David J. Dabbs, Esther Elishaev and Rohit Bhargava. Immunohistochemistry and HPV
in situ hybridization in distinction between endocervical and endometrial
adenocarcinoma: A comparative tissue microarray study of 76 tumors, International
Journal of Gynecological Cancer, 23(2):380-4, 2013.
Jing Yu, Sara E. Monaco, Agnieszka Onisko,
Rohit Bhargava, David J. Dabbs, Kathleen M. Cieply,
Jeffrey L. Fine. A Validation Study of Quantum
Dot Multispectral Imaging to Evaluate Hormone Receptor Status in Ductal
Carcinoma In Situ (DCIS) of the Breast, Human Pathology, 44(3):394-401,
2013.
Zhao C, Chen X, Onisko A, Kanbour A, Austin RM. Follow-up
outcomes for a large cohort of US women with negative imaged liquid-based
cytology findings and positive high risk human papillomavirus test results. Gynecol Oncol. Aug;122(2):291-6, 2011.
R. Marshall Austin, Agnieszka Onisko,
and Marek J. Druzdzel. The Pittsburgh Cervical
Cancer Screening Model. A Risk Assessment Tool. Arch Pathol Lab Med. 134:744–750, 2010.
Agnieszka Oniśko. Application
of dynamic Bayesian networks to risk assessment in medicine. Zeszyty Naukowe Politechniki Białostockiej. Informatyka, pages 35-49, No 5,
2010.
Zhao C, Florea A, Onisko A, Austin RM. Histologic Follow-up
Results in 662 Patients with Pap Test Findings of Atypical Glandular Cells:
Results From a Large Academic Womens Hospital
Laboratory Employing Sensitive Screening Methods. Gynecol Oncol. Sep;114(3):381-2, 2009.
Rohit Bhargava, Joan Striebel,
Sushil Beriwal, John C. Flickinger, Agnieszka Onisko, Gretchen Ahrendt and
David J. Dabbs. Prevalence,
Morphologic Features and Proliferation Indices of Breast Carcinoma Molecular
Classes Using Immunohistochemical Surrogate Markers. Int J Clin Exp Pathol 2(5), 444-455; 2009.
Agnieszka Oniśko. Knowledge
Acquisition from Human Experts for Building Bayesian Network Models. Zeszyty Naukowe Politechniki Białostockiej: Metody eksploracji i
reprezentacji danych, pages 109-120, No 2, 2007.
Carmen Lacave, Agnieszka Oniśko, and Francisco J. Díez. Use
of Elvira's explanation facility for debugging probabilistic expert systems. Knowledge-Based
Systems, Elsevier, vol. 19(8), pages 730-738, 2006.
Jaroslaw Makal, Andrzej Nazarkiewicz,
Agnieszka Oniśko, Piotr Orzechowski.
Expert system for diagnosis of Benign Prostatic Hyperplasia. Journal of
Automation and Measurements (in Polish) No. 7/8, pages 193-196, 2004.
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. Learning
Bayesian Network Parameters from Small Data Sets: Application of Noisy-OR Gates. International
Journal of Approximate Reasoning, Vol. 27/2, pages: 165-182, 2001.
Hanna Wasyluk, Agnieszka Oniśko and Marek J. Druzdzel. Support of Diagnosis of Liver
Disorders based on a Causal Bayesian Network Model. Medical Science
Monitor, Vol. 7, Suppl. 1: 327-32, May, 2001.
Journal abstracts:
David J. Dabbs, Agnieszka Onisko,
Binara Assylbekova, Xin Li,
Rohit Bhargava, Beth Z. Clark. Breast Cancer Global Tumor Biomarkers: A Quality
Assurance Study of Intratumor Heterogeneity, United States and Canadian Academy
of Pathology’s 106th Annual Meeting, March 4-10, 2017, San Antonio, TX, USA.
Dinesh Pradhan, David J. Dabbs, Rohit Bhargava,
Agnieszka Onisko, Michelle Stram,
Mirka W. Jones. Expression of PD-L1 and GHRH-R in
Uterine Carcinosarcoma: Potential Markers for Targeted Therapy}, United States
and Canadian Academy of Pathology’s 106th Annual Meeting, March 4-10, 2017, San
Antonio, TX, USA.
Dinesh Pradhan, David J. Dabbs, Rohit Bhargava,
Agnieszka Onisko, Michelle Stram,
Mirka W. Jones. Clinical and Immunohistochemical
Study of Uterine Carcinosarcoma in a Large Academic Women Center.
American Society for Clinical Pathology (ASCP) Annual Meeting, Las Vegas,
NV, September 14–16, 2016.
Jing Yu, Agnieszka
Onisko, R. Marshall Austin. Bethesda System Reporting of Benign-Appearing
Endometrial Cells in Women 40 and Older: Analysis of Predictive Value from a
Large Academic Women's Hospital Database, United States and Canadian Academy of
Pathology’s 105th Annual Meeting, March 12-18, 2016, Seattle, WA, USA. Laboratory Investigation 96, 123A-123A.
Mirka W. Jones,
Michelle Stram, Agnieszka Onisko,
Rohit Bhargava, David J. Dabbs. The Use of Immunohistochemistry in Distinction
between Clear Cell and Squamous Differentiation in Adenocarcinoma of the
Endometrium, United States and Canadian Academy of Pathology’s 105th Annual
Meeting, 12-18 marca, 2016, Seattle, WA, USA. Modern Pathology vol. 29, Supplement: 2, s:
311A-312A, Meeting Abstract: 1238.
Gabriela Quiroga
Garza, Agnieszka Onisko, R. Marshall Austin. Verification bias-adjusted Cervical
Screening Test Sensitivity for Histopathologic High Grade Cervical
Intraepithelial Neoplasia and Cervical Cancer in a Large Academic Womens Hospital Laboratory, United States & Canadian
Academy of Pathology’s 103rd Annual Meeting, March 1-7, 2014, San Diego,
CA, USA, Laboratory Investigation, Volume: 94, s.
117A-117A, Supplement: 1, Meeting Abstract: 471, 2014.
Erika Rodriguez, Agnieszka Onisko,
and R. Marshall Austin. The Pittsburgh Cervical Cancer Screening Model
Indicates That Patient History Significantly Impacts Future Cervical Cancer
Risk in Patients with Current Negative HPV Results, United States and Canadian
Academy of Pathology’s 102nd Annual Meeting, March 2-8, 2013, Baltimore, MD,
USA.
Gabriela Quiroga Garza, Agnieszka Onisko,
and R. Marshall Austin.Verification bias-adjusted
Cervical Screening Test Sensitivity for Histopathologic High Grade Cervical
Intraepithelial Neoplasia and Cervical Cancer in a Large Academic Womens Hospital Laboratory, United States & Canadian
Academy of Pathology’s 103rd Annual Meeting, March 1-7, 2014, San Diego,
CA, USA.
Mirka W. Jones,
Giuliana Trucco, Agnieszka Onisko, Rohit Bhargava,
David J. Dabbs. PTEN and P16 Expression Highlights Atypia and Malignant
Transformation in Smooth Muscle Tumors of the Uterus, United States and
Canadian Academy of Pathology’s 102nd Annual Meeting, March 2-8, 2013,
Baltimore, MD, USA.
R. Marshall Austin,
Agnieszka Oniśko, Marek J. Druzdzel. Patient History Dependent Risk Assessments
for Cervical Pre-cancer and Invasive Cancer Using the Pittsburgh Cervical
Cancer Screening Model, Journal of the American Society of Cytopathology, vol.
1, issue 1, Supplement, pages S3-S4, November 2012.
Frank Schneider,
Agnieszka Oniśko, R. Murali. Diagnostic Certainty of a Mesothelioma Diagnosis Based
on Immunophenotype, Modern Pathology, vol. 25, Supplement 2, page 490A,
February 2012.
Chengquan Zhao, Xiangbai Chen, Baoying Weng,
Agnieszka Oniśko, R. Marshall Austin. Analysis of
70,123 Negative Pap Tests with high risk HPV co-test Results, CytoJournal, vol. 8, issue 1, November 2011, page 16.
Liron Pantanowitz,
Agnieszka Oniśko, R. Marshall Austin. Screening for
Cervical Cancer Using Data, Critical Values Magazine of American
Society for Clinical Pathology, vol. 4, issue 2, April 2011, pages 20-22.
J. Picarsic, A.
Brufsky, Agnieszka Oniśko, M. Chivukula. Predictors of invasive breast cancer or
DCIS recurrence in estrogen receptor positive (ER+) and estrogen receptor
negative (ER-) ductal carcinoma in situ (DCIS) patients with and without
associated invasive carcinoma (IC), Journal of Clinical Oncology, vol 27, no 15S,
May 20 Supplement, 2009.
R. Marshall Austin,
Agnieszka Oniśko, Marek J. Druzdzel. The Pittsburgh Cervical Cancer Screening
Model, Cancer Cytopathology, vol. 114, issue 5, October 2008, supplement, page
345.
Amal Kanbour-Shakir,
Agnieszka Oniśko, R. Marshall Austin. High Risk HPV
Test Results Preceding 500 Cases of Biopsy Proven High Grade Cervical Squamous
Dysplasia (CIN 2/3), Cancer Cytopathology, vol. 114, issue 5, October 2008,
supplement, page 345-346.
R. Marshall Austin,
Agnieszka Oniśko, Marek J. Druzdzel. Bayesian Network Model Analysis as a
Quality Control and Risk Assessment Tool in Cervical Cancer Screening. 2008
Biennial Meeting of ASCCP. Meeting Abstracts, Journal of Lower Genital Tract
Disease. 12(2):153-179, April 2008.
MW Jones, A Oniśko, DJ
Dabbs, E Elishaev and R Bhargava. The value of
immunohistochemistry in distinction between endocervical adenocarcinoma and
adenocarcinoma of endometrium, endometrioid type. A comparative tissue
microarray study of 76 cases. Histopathol. 2008;53
(supplement 1):1-432. Abstract 427.
Rohit Bhargava, Joan Striebel,
Agnieszka Oniśko, Kim McManus, David J Dabbs. Ki-67
labeling index in breast carcinoma: An immunohistochemical study with correlation
to molecular subtypes. Journal of Clinical Oncology. 2008; 26: May 20
supplement-Abstract 22107.
Jarosław Makal, Andrzej Nazarkiewicz,
Robert Kozłowski, Agnieszka Oniśko,
Adam Idźkowski. Internetowa
baza danych pacjentów cierpiących na dolegliwości dolnych dróg moczowych
(The interactive data base of patients with lower urinary tract symptoms). Urologia Polska, T.60, supl.1 (2007), s.51. XXXVII Kongres Naukowy
Polskiego Towarzystwa Urologicznego, Warszawa, czerwiec, 2007.
Book chapters:
Agnieszka Oniśko, R.
Marshall Austin. Dynamic Bayesian Network for Cervical Cancer Screening,
In Peter J.F. Lucas and Arjen Hommersom (eds),
Foundations of Biomedical Knowledge Representations. Methods and
Applications, Springer, Lectures Notes in Artificial Intelligence 9521:
207-218, 2015.
Agnieszka Onisko, Allan
Tucker, Marek J. Druzdzel. Prediction and Prognosis of Health and Disease,
Peter J.F. Lucas, Arjen Hommersom (eds), Foundations
of Biomedical Knowledge Representations. Methods and Applications, Springer,
Lectures Notes in Artificial Intelligence 9521, s. 181-188, 2015.
Agnieszka Oniśko. Medical
Diagnosis, In Patrick Naim, Olivier Pourret, and Bruce Marcot(eds),
Bayesian Networks: A Practical Guide to Applications, Wiley & Sons, March,
2008, pages 15-32.
Agnieszka Oniśko, Garrick L.
Wallstrom, and Michael M. Wagner. Decision Analysis.
In Handbook of Biosurveillance. ed. M. Wagner, A.
Moore, and R. Aryel. New York, Elsevier, pages
405-417, 2006.
Garrick Wallstrom, Michael
M. Wagner, Agnieszka Oniśko. Probabilistic
interpretation of surveillance data. In Handbook of Biosurveillance.
ed. M. Wagner, A. Moore, and R. Aryel. New York,
Elsevier, pages 417-422, 2006.
Bruce Y. Lee, Michael M. Wagner, Agnieszka Oniśko, Vahan Grigoryan.
Economic Studies in Biosurveillance. In Handbook of Biosurveillance. ed. M. Wagner, A. Moore, and R. Aryel. New York, Elsevier, pages 423-435, 2006.
Major peer reviewed conferences:
Agnieszka Oniśko, Marek J.
Druzdzel. Impact of Bayesian network model structure on the accuracy of
medical diagnostic systems, Proceedings of 13th International
Conference on Artificial Intelligence and Soft Computing (ICAISC’2014),
eds. Leszek Rutkowski, Marcin Korytkowski, Rafal Scherer, Ryszard Tadeusiewicz, Lofti A. Zadeh,
Jacek M. Zurada, Heidelberg, Springer, Lecture Notes
in Computer Science, Vol. 8467: 167-178, Zakopane, 1-5 czerwca,
2014.
Michael M. Wagner, Garrick Wallstrom
and Agnieszka Oniśko. Issue a Boil-Water Advisory
or Wait for Definitive Information? A Decision Analysis. In Proceedings
of the 2005 Annual Symposium of the American Medical Informatics Association
(AMIA-2005), Washington, D.C., October 22-26, 2005.
Marek J. Druzdzel,
Agnieszka Oniśko, Daniel Schwartz, John N. Dowling, and Hanna Wasyluk. Knowledge
engineering for very large decision-analytic medical models. In Proceedings of
the 1999 Annual Symposium of the American Medical Informatics Association
(AMIA-1999), Washington, D.C., November 6-10, 1999.
Agnieszka Oniśko,
Peter Lucas, and Marek J. Druzdzel. Comparison of Rule-based and Bayesian
Network Approaches in Medical Diagnostic Systems. In Proceedings of the Eighth
Conference on Atrificial Intelligence in Medicine
(AIME-2001), Lecture Notes in AI, pages 281-292, Cascais, Portugal, July, 1-4,
2001.
Other reviewed conferences and workshops (selected):
Agnieszka Onisko.
Modeling Uncertain Medical Knowledge with Bayesian Networks: Engineering
and Applications. In Lecture Notes of the ICB Seminar. 147th ICB Seminar. Tenth
International Seminar Statistics and Clinical Practice, pages: 57-61, Warsaw,
May 15-18, 2016.
Agnieszka Oniśko and
Marek J. Druzdzel. Impact
of Quality of Bayesian Networks Parameters on Accuracy of Medical Diagnostic
Systems: An Empirical Study. In Working Notes of the Workshop Probabilistic
Models in Biomedicine. European Conference on Articial
Intelligence in Medicine (AIME-11), Bled, Slovenia, 2011.
Marek J. Druzdzel and
Agnieszka Oniśko. The
Impact of Overconfidence Bias on Practical Accuracy of Bayesian Network Models:
An Empirical Study. In Working Notes of the 2008 Bayesian Modelling
Applications Workshop, Special Theme: How Biased Are Our Numbers? Part of the
Annual Conference on Uncertainty in Artificial Intelligence (UAI-2008),
Helsinki, Finland, 9 July 2008.
Marek J. Druzdzel and
Agnieszka Oniśko. Are
Bayesian Networks Sensitive to Precision of Their Parameters? In S.T. Wierzchon, M. Klopotek, and M. Michalewicz
(eds.), Intelligent Information Systems XVI, Proceedings of the International
IIS'08 Conference, pages 35-44, Academic Publishing House EXIT, Warsaw, Poland,
June 2008.
Jarosław Makal,
Agnieszka Oniśko, Andrzej Nazarkiewicz. The medical signals acquisition and
management system for computer-aid of prostate cancer diagnosis, IEEE
Instrumentation and Measurement Technology: Synergy of Science and Technology
in Instrumentation and Measurement: conference proceedings, IEEE.
Instrumentation and Measurement Society, Warszwa, May
1-3, 2007.
Agnieszka Oniśko and Marek
J. Druzdzel. Effect of Imprecision in Probabilities on Bayesian Network Models:
An Empirical Study. AIME Workshop on Model-based and Qualitative
Reasoning in Biomedicine, Protaras, Cyprus, October,
2003.
Agnieszka Oniśko, Marek J.
Druzdzel, and Hanna Wasyluk: An experimental
comparison of methods for handling incomplete data learning parameters of
Bayesian networks, Intelligent Information Systems 2002: Proceedings of the
[XI] IIS'2002 Symposium eds. Mieczysław A. Kłopotek, Maciej Michalewicz, Sławomir T. Wierzchoń; Polish
Academy of Sciences Heidelberg Physica-Verlag,
Advances in Soft Computing, Sopot, June 3-6, 2002, pages: 351-360.
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk: Uczenie parametrów sieci bayesowskich z
danych z wykorzystaniem bramek "Noisy-Or" (in Polish). In: Badania
operacyjne i systemowe wobec wyzwań XXI wieku, pod red. Zdzisława Bubnickiego,
Olgierda Hryniewicza, Romana Kulikowskiego, Akademicka Oficyna Wydawnicza EXIT,
Warszawa 2002, Seria: Problemy współczesnej nauki. Teoria i zastosowania, strony: IV:19-26.
Agnieszka Oniśko. Evaluation
of the HEPAR II system for diagnosis of liver disorders. Notes on the AIME
Workshop: Bayesian Models in Medicine, Cascais, Portugal, July, 1, 2001.
Carmen Lacave, Agnieszka Oniśko, and Javier Diez. Debugging medical Bayesian
networks with Elvira's explanation facility. Notes on the AIME Workshop:
Bayesian Models in Medicine, Cascais, Portugal, July, 1, 2001.
Agnieszka Oniśko, Leon
Bobrowski, Marek J. Druzdzel, and Hanna Wasyluk. HEPAR I HEPAR II – komputerowe
systemy wspomagające diagnozowanie chorób wątroby (In Polish). The Twelfth
Conference of Biocybernetics and Biomedical Engineering, pages 625-629, Warsaw,
Poland, November 28-30, 2001 (Best Young Investigator Paper award).
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. Learning Bayesian Network Parameters from
Small Data Sets: Application of Noisy-OR Gates. Notes on the ECAI Workshop:
Bayesian and Causal Networks: From Inference to Data Mining, Berlin, Germany,
August, 22, 2000.
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. Extension of the HEPAR II Model to
Multiple-Disorder Diagnosis. In Advances in Soft Computing, pages 303-313, Physica-Verlag, Heidelberg, New York, 2000.
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. A Bayesian Network Model for Diagnosis of
Liver Disorders. The Eleventh Conference of Biocybernetics and Biomedical
Engineering, pages 842-846, Warsaw, Poland, December 2-4, 1999 (Best Young
Investigator Paper award).
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. Graphical probabilistic models in
diagnosis of liver disorders. In Working notes of the Third International
Seminar on Statistics and Clinical Practice (45th Seminar of the International
Center of Biocybernetics), Warsaw, Poland, June 24-27, 1998.
Agnieszka Oniśko,
Marek J. Druzdzel, and Hanna Wasyluk. A probabilistic causal model for diagnosis
of liver disorders. In Proceedings of the Seventh Symposium on Intelligent
Information Systems (IIS-98), pages 379-387, Malbork,
Poland, June 15-19, 1998.